From 5bbf11ad5a9f2921d13cd95bcc36594e9f78c4e4 Mon Sep 17 00:00:00 2001
From: Anthony Wang
Date: Wed, 2 Jun 2021 16:46:12 -0500
Subject: Add latest changes

---
 main.cpp | 31 ++++++++++++++++++++-----------
 1 file changed, 20 insertions(+), 11 deletions(-)

diff --git a/main.cpp b/main.cpp
index e80b645..6fbe40a 100644
--- a/main.cpp
+++ b/main.cpp
@@ -2,8 +2,13 @@
 using namespace std;
 using ll = long long;
 
-string P[3];
-double score[3][7];
+string P[3] = {
+    "ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA",
+    "CCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTC",
+    "TTTCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTATTAACATCACTAGGTTTCAAACTTTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGATTCTTCTTCAGGTTGGACAGCTGGTGCTGCAGCTTATTATGTGGGTTATC" };
+double score[3][7] = { {449.7,449.7,449.7,449.7,437.7,161,147.35},
+{449.7,449.7,449.4,449.7,437.7,158,149},
+{449.7,449.4,404.4,450,449.7,172,146.85} };
 
 vector<string> vrt[7];
 
@@ -54,7 +59,7 @@ bitset<k> test(string & probe) {
 	for (int i = 0; i < 7; ++i)
 		for (int j = i+1; j < 7; ++j)
 			{
-				if (abs(avg[i]-avg[j]) > 10) bs[cnt] = 1;
+				if (abs(avg[i]-avg[j]) > 5) bs[cnt] = 1;
 				cnt++;
 			}
 	return bs;
@@ -62,13 +67,6 @@ bitset<k> test(string & probe) {
 
 vector<string> dp[4][1 << k];
 void analyze_spike_sequences(){
-	freopen("spike_sequences.txt", "r", stdin);
-	for (int i = 0; i < 7; ++i) { // 7 vrts
-		for (int j = 0; j < 20; ++j) {
-			string s, t; cin >> s >> t;
-			vrt[i].push_back(t);
-		}
-	}
 	int cnt = 0;
   for (int i = 0; i < 7; ++i) {
 		for (int j = 0; j <= vrt[i][0].size()-150; j += rand()%100) {
@@ -112,6 +110,7 @@ void analyze_spike_sequences(){
 }
 
 void mkscores() {
+    cout << '{';
 	for (int i = 0; i < 3; ++i) {
 		cout << "{";
 		for (int j = 0; j < 7; ++j) {
@@ -122,8 +121,11 @@ void mkscores() {
 			cout << score[i][j];
 			if (j < 6) cout << ",";
 		}
-		cout <<"}\n";
+		cout <<"}";
+        if (i < 2) cout << ",";
+        cout << '\n';
 	}
+	cout << '}';
 }
 
 // classify a string
@@ -162,6 +164,13 @@ int main(){
   ios::sync_with_stdio(0);
   cin.tie(0);
   if (fopen("spike_sequences.txt", "r")) {
+      freopen("spike_sequences.txt", "r", stdin);
+	for (int i = 0; i < 7; ++i) { // 7 vrts
+		for (int j = 0; j < 20; ++j) {
+			string s, t; cin >> s >> t;
+			vrt[i].push_back(t);
+		}
+	}
 		if (P[0] != "") mkscores();
         else analyze_spike_sequences();
 		return 0;
-- 
cgit v1.2.3-70-g09d2