gitea

Development moved to Codeberg

  1. 1
  2. 2
  3. 3
  4. 4
  5. 5
  6. 6
  7. 7
  8. 8
  9. 9
  10. 10
  11. 11
  12. 12
  13. 13
  14. 14
  15. 15
  16. 16
  17. 17
  18. 18
  19. 19
  20. 20
  21. 21
  22. 22
  23. 23
  24. 24
  25. 25
  26. 26
  27. 27
  28. 28
  29. 29
  30. 30
  31. 31
  32. 32
  33. 33
  34. 34
  35. 35
  36. 36
  37. 37
  38. 38
  39. 39
  40. 40
  41. 41
  42. 42
  43. 43
  44. 44
  45. 45
  46. 46
  47. 47
  48. 48
  49. 49
  50. 50
  51. 51
  52. 52
  53. 53
  54. 54
  55. 55
  56. 56
  57. 57
  58. 58
  59. 59
  60. 60
  61. 61
  62. 62
  63. 63
  64. 64
  65. 65
  66. 66
  67. 67
  68. 68
  69. 69
  70. 70
  71. 71
  72. 72
  73. 73
  74. 74
  75. 75
  76. 76
  77. 77
  78. 78
  79. 79
  80. 80
  81. 81
  82. 82
  83. 83
  84. 84
  85. 85
  86. 86
  87. 87
  88. 88
  89. 89
  90. 90
  91. 91
  92. 92
  93. 93
  94. 94
  95. 95
  96. 96
  97. 97
  98. 98
  99. 99
  100. 100
  101. 101
  102. 102
  103. 103
  104. 104
  105. 105
  106. 106
  107. 107
  108. 108
  109. 109
  110. 110
  111. 111
  112. 112
  113. 113
  114. 114
  115. 115
  116. 116
  117. 117
  118. 118
  119. 119
  120. 120
  121. 121
  122. 122
  123. 123
  124. 124
  125. 125
  126. 126
  127. 127
  128. 128
  129. 129
  130. 130
  131. 131
  132. 132
  133. 133
  134. 134
  135. 135
  136. 136
  137. 137
  138. 138
  139. 139
  140. 140
  141. 141
  142. 142
  143. 143
  144. 144
  145. 145
  146. 146
  147. 147
  148. 148
  149. 149
  150. 150
  151. 151
  152. 152
  153. 153
  154. 154
  155. 155
  156. 156
  157. 157
  158. 158
  159. 159
  160. 160
  161. 161
  162. 162
  163. 163
  164. 164
  165. 165
  166. 166
  167. 167
  168. 168
  169. 169
  170. 170
  171. 171
  172. 172
  173. 173
  174. 174
  175. 175
  176. 176
  177. 177
  178. 178
  179. 179
  180. 180
  181. 181
  182. 182
  183. 183
  184. 184
  185. 185
  186. 186
  187. 187
  188. 188
  189. 189
  190. 190
  191. 191
  192. 192
  193. 193
  194. 194
  195. 195
  196. 196
  197. 197
  198. 198
  199. 199
  200. 200
  201. 201
  202. 202
  203. 203
  204. 204
  205. 205
  206. 206
  207. 207
  208. 208
  209. 209
  210. 210
  211. 211
  212. 212
  213. 213
  214. 214
  215. 215
  216. 216
  217. 217
  218. 218
  219. 219
  220. 220
  221. 221
  222. 222
  223. 223
  224. 224
  225. 225
  226. 226
  227. 227
  228. 228
  229. 229
  230. 230
  231. 231
  232. 232
  233. 233
  234. 234
  235. 235
  236. 236
  237. 237
  238. 238
  239. 239
  240. 240
  241. 241
  242. 242
  243. 243
  244. 244
  245. 245
  246. 246
  247. 247
  248. 248
  249. 249
  250. 250
  251. 251
  252. 252
  253. 253
  254. 254
  255. 255
  256. 256
  257. 257
  258. 258
  259. 259
  260. 260
  261. 261
  262. 262
  263. 263
  264. 264
  265. 265
  266. 266
  267. 267
  268. 268
  269. 269
  270. 270
  271. 271
  272. 272
  273. 273
  274. 274
  275. 275
  276. 276
  277. 277
  278. 278
  279. 279
  280. 280
  281. 281
  282. 282
  283. 283
  284. 284
  285. 285
  286. 286
  287. 287
  288. 288
  289. 289
  290. 290
  291. 291
  292. 292
  293. 293
  294. 294
  295. 295
  296. 296
  297. 297
  298. 298
  299. 299
  300. 300
  301. 301
  302. 302
  303. 303
  304. 304
  305. 305
  306. 306
  307. 307
  308. 308
  309. 309
  310. 310
  311. 311
  312. 312
  313. 313
  314. 314
  315. 315
  316. 316
// Package quantile computes approximate quantiles over an unbounded data
// stream within low memory and CPU bounds.
//
// A small amount of accuracy is traded to achieve the above properties.
//
// Multiple streams can be merged before calling Query to generate a single set
// of results. This is meaningful when the streams represent the same type of
// data. See Merge and Samples.
//
// For more detailed information about the algorithm used, see:
//
// Effective Computation of Biased Quantiles over Data Streams
//
// http://www.cs.rutgers.edu/~muthu/bquant.pdf
package quantile

import (
	"math"
	"sort"
)

// Sample holds an observed value and meta information for compression. JSON
// tags have been added for convenience.
type Sample struct {
	Value float64 `json:",string"`
	Width float64 `json:",string"`
	Delta float64 `json:",string"`
}

// Samples represents a slice of samples. It implements sort.Interface.
type Samples []Sample

func (a Samples) Len() int           { return len(a) }
func (a Samples) Less(i, j int) bool { return a[i].Value < a[j].Value }
func (a Samples) Swap(i, j int)      { a[i], a[j] = a[j], a[i] }

type invariant func(s *stream, r float64) float64

// NewLowBiased returns an initialized Stream for low-biased quantiles
// (e.g. 0.01, 0.1, 0.5) where the needed quantiles are not known a priori, but
// error guarantees can still be given even for the lower ranks of the data
// distribution.
//
// The provided epsilon is a relative error, i.e. the true quantile of a value
// returned by a query is guaranteed to be within (1±Epsilon)*Quantile.
//
// See http://www.cs.rutgers.edu/~muthu/bquant.pdf for time, space, and error
// properties.
func NewLowBiased(epsilon float64) *Stream {
	ƒ := func(s *stream, r float64) float64 {
		return 2 * epsilon * r
	}
	return newStream(ƒ)
}

// NewHighBiased returns an initialized Stream for high-biased quantiles
// (e.g. 0.01, 0.1, 0.5) where the needed quantiles are not known a priori, but
// error guarantees can still be given even for the higher ranks of the data
// distribution.
//
// The provided epsilon is a relative error, i.e. the true quantile of a value
// returned by a query is guaranteed to be within 1-(1±Epsilon)*(1-Quantile).
//
// See http://www.cs.rutgers.edu/~muthu/bquant.pdf for time, space, and error
// properties.
func NewHighBiased(epsilon float64) *Stream {
	ƒ := func(s *stream, r float64) float64 {
		return 2 * epsilon * (s.n - r)
	}
	return newStream(ƒ)
}

// NewTargeted returns an initialized Stream concerned with a particular set of
// quantile values that are supplied a priori. Knowing these a priori reduces
// space and computation time. The targets map maps the desired quantiles to
// their absolute errors, i.e. the true quantile of a value returned by a query
// is guaranteed to be within (Quantile±Epsilon).
//
// See http://www.cs.rutgers.edu/~muthu/bquant.pdf for time, space, and error properties.
func NewTargeted(targetMap map[float64]float64) *Stream {
	// Convert map to slice to avoid slow iterations on a map.
	// ƒ is called on the hot path, so converting the map to a slice
	// beforehand results in significant CPU savings.
	targets := targetMapToSlice(targetMap)

	ƒ := func(s *stream, r float64) float64 {
		var m = math.MaxFloat64
		var f float64
		for _, t := range targets {
			if t.quantile*s.n <= r {
				f = (2 * t.epsilon * r) / t.quantile
			} else {
				f = (2 * t.epsilon * (s.n - r)) / (1 - t.quantile)
			}
			if f < m {
				m = f
			}
		}
		return m
	}
	return newStream(ƒ)
}

type target struct {
	quantile float64
	epsilon  float64
}

func targetMapToSlice(targetMap map[float64]float64) []target {
	targets := make([]target, 0, len(targetMap))

	for quantile, epsilon := range targetMap {
		t := target{
			quantile: quantile,
			epsilon:  epsilon,
		}
		targets = append(targets, t)
	}

	return targets
}

// Stream computes quantiles for a stream of float64s. It is not thread-safe by
// design. Take care when using across multiple goroutines.
type Stream struct {
	*stream
	b      Samples
	sorted bool
}

func newStream(ƒ invariant) *Stream {
	x := &stream{ƒ: ƒ}
	return &Stream{x, make(Samples, 0, 500), true}
}

// Insert inserts v into the stream.
func (s *Stream) Insert(v float64) {
	s.insert(Sample{Value: v, Width: 1})
}

func (s *Stream) insert(sample Sample) {
	s.b = append(s.b, sample)
	s.sorted = false
	if len(s.b) == cap(s.b) {
		s.flush()
	}
}

// Query returns the computed qth percentiles value. If s was created with
// NewTargeted, and q is not in the set of quantiles provided a priori, Query
// will return an unspecified result.
func (s *Stream) Query(q float64) float64 {
	if !s.flushed() {
		// Fast path when there hasn't been enough data for a flush;
		// this also yields better accuracy for small sets of data.
		l := len(s.b)
		if l == 0 {
			return 0
		}
		i := int(math.Ceil(float64(l) * q))
		if i > 0 {
			i -= 1
		}
		s.maybeSort()
		return s.b[i].Value
	}
	s.flush()
	return s.stream.query(q)
}

// Merge merges samples into the underlying streams samples. This is handy when
// merging multiple streams from separate threads, database shards, etc.
//
// ATTENTION: This method is broken and does not yield correct results. The
// underlying algorithm is not capable of merging streams correctly.
func (s *Stream) Merge(samples Samples) {
	sort.Sort(samples)
	s.stream.merge(samples)
}

// Reset reinitializes and clears the list reusing the samples buffer memory.
func (s *Stream) Reset() {
	s.stream.reset()
	s.b = s.b[:0]
}

// Samples returns stream samples held by s.
func (s *Stream) Samples() Samples {
	if !s.flushed() {
		return s.b
	}
	s.flush()
	return s.stream.samples()
}

// Count returns the total number of samples observed in the stream
// since initialization.
func (s *Stream) Count() int {
	return len(s.b) + s.stream.count()
}

func (s *Stream) flush() {
	s.maybeSort()
	s.stream.merge(s.b)
	s.b = s.b[:0]
}

func (s *Stream) maybeSort() {
	if !s.sorted {
		s.sorted = true
		sort.Sort(s.b)
	}
}

func (s *Stream) flushed() bool {
	return len(s.stream.l) > 0
}

type stream struct {
	n float64
	l []Sample
	ƒ invariant
}

func (s *stream) reset() {
	s.l = s.l[:0]
	s.n = 0
}

func (s *stream) insert(v float64) {
	s.merge(Samples{{v, 1, 0}})
}

func (s *stream) merge(samples Samples) {
	// TODO(beorn7): This tries to merge not only individual samples, but
	// whole summaries. The paper doesn't mention merging summaries at
	// all. Unittests show that the merging is inaccurate. Find out how to
	// do merges properly.
	var r float64
	i := 0
	for _, sample := range samples {
		for ; i < len(s.l); i++ {
			c := s.l[i]
			if c.Value > sample.Value {
				// Insert at position i.
				s.l = append(s.l, Sample{})
				copy(s.l[i+1:], s.l[i:])
				s.l[i] = Sample{
					sample.Value,
					sample.Width,
					math.Max(sample.Delta, math.Floor(s.ƒ(s, r))-1),
					// TODO(beorn7): How to calculate delta correctly?
				}
				i++
				goto inserted
			}
			r += c.Width
		}
		s.l = append(s.l, Sample{sample.Value, sample.Width, 0})
		i++
	inserted:
		s.n += sample.Width
		r += sample.Width
	}
	s.compress()
}

func (s *stream) count() int {
	return int(s.n)
}

func (s *stream) query(q float64) float64 {
	t := math.Ceil(q * s.n)
	t += math.Ceil(s.ƒ(s, t) / 2)
	p := s.l[0]
	var r float64
	for _, c := range s.l[1:] {
		r += p.Width
		if r+c.Width+c.Delta > t {
			return p.Value
		}
		p = c
	}
	return p.Value
}

func (s *stream) compress() {
	if len(s.l) < 2 {
		return
	}
	x := s.l[len(s.l)-1]
	xi := len(s.l) - 1
	r := s.n - 1 - x.Width

	for i := len(s.l) - 2; i >= 0; i-- {
		c := s.l[i]
		if c.Width+x.Width+x.Delta <= s.ƒ(s, r) {
			x.Width += c.Width
			s.l[xi] = x
			// Remove element at i.
			copy(s.l[i:], s.l[i+1:])
			s.l = s.l[:len(s.l)-1]
			xi -= 1
		} else {
			x = c
			xi = i
		}
		r -= c.Width
	}
}

func (s *stream) samples() Samples {
	samples := make(Samples, len(s.l))
	copy(samples, s.l)
	return samples
}